- Department of General Medicine
- Department of Anesthesiology
- Department of Ophthalmology
- Department of Biological Imaging
- Department of Surgery
- Department of Dermatology and Allergology (Biederstein campus)
- Department of Nutritional Medicine
- Department of Gynecology
- Division of Perinatal Medicine and Perinatal Physiology
- Department of Vascular and Endovascular Surgery
- Department of History and Ethics of Medicine
- Department of Otolaryngology
- Department of Human Genetics
- Department of Pediatric Medicine (Schwabing hospital)
- Department of Clinical Chemistry and Pathobiochemistry
- Department of Internal Medicine I - Cardiology
- Department of Internal Medicine II - Gastroenterology
- Division of Nephrology
- Division of Clinical Toxicology
- Department of Internal Medicine III - Hematooncology
- Department of Medical Microbiology, Immunology and Hygiene
- Department of Medical Statistics and Epidemiology
- Department of Molecular Allergology
- Department of Molecular Immunology
- Department of Oral and Maxillofacial Surgery
- Department of Neurosurgery
- Department of Neurology
- Department of Neuroscience (Friedrich-Schiedel-Stiftungslehrstuhl, Biederstein campus)
- Department of Nuclear Medicine
- Department of Experimental Oncology and Therapeutic Research
- Department of Orthopedics and Sports Orthopedics
- Division of Sports Orthopedics
- Department of General Pathology and Pathologcial Anatomy
- Department of Preventive and Rehabilitative Sports Medicine (Uptown Munich, Campus C, Georg-Brauchle-Ring 56)
- Department of Pharmacology and Toxicology (Biederstein campus)
- Department of Plastic Surgery and Hand Surgery
- Department of Psychiatry and Psychotherapy
- Department of Psychosomatic Medicine and Psychotherapy
- Department of Diagnostic and Interventionial Radiology
- Division of Interventional Radiology
- Division of Diagnostic and Interventional Neuroradiology
- Department of Radiation Therapy and Radiooncology
- Department of Toxicology and Environmental Hygiene (Biederstein campus)
- Department of Trauma Surgery
- Department of Urology
- Department of Virology